Transformer API for Probe Miner
GET
Retrieve transformer info
{{baseUrl}}/:service/transformer_info
QUERY PARAMS
service
Examples
REQUEST
CURL *hnd = curl_easy_init();
curl_easy_setopt(hnd, CURLOPT_CUSTOMREQUEST, "GET");
curl_easy_setopt(hnd, CURLOPT_URL, "{{baseUrl}}/:service/transformer_info");
CURLcode ret = curl_easy_perform(hnd);
(require '[clj-http.client :as client])
(client/get "{{baseUrl}}/:service/transformer_info")
require "http/client"
url = "{{baseUrl}}/:service/transformer_info"
response = HTTP::Client.get url
puts response.body
using System.Net.Http.Headers;
var client = new HttpClient();
var request = new HttpRequestMessage
{
Method = HttpMethod.Get,
RequestUri = new Uri("{{baseUrl}}/:service/transformer_info"),
};
using (var response = await client.SendAsync(request))
{
response.EnsureSuccessStatusCode();
var body = await response.Content.ReadAsStringAsync();
Console.WriteLine(body);
}
var client = new RestClient("{{baseUrl}}/:service/transformer_info");
var request = new RestRequest("", Method.Get);
var response = client.Execute(request);
package main
import (
"fmt"
"net/http"
"io"
)
func main() {
url := "{{baseUrl}}/:service/transformer_info"
req, _ := http.NewRequest("GET", url, nil)
res, _ := http.DefaultClient.Do(req)
defer res.Body.Close()
body, _ := io.ReadAll(res.Body)
fmt.Println(res)
fmt.Println(string(body))
}
GET /baseUrl/:service/transformer_info HTTP/1.1
Host: example.com
AsyncHttpClient client = new DefaultAsyncHttpClient();
client.prepare("GET", "{{baseUrl}}/:service/transformer_info")
.execute()
.toCompletableFuture()
.thenAccept(System.out::println)
.join();
client.close();
HttpRequest request = HttpRequest.newBuilder()
.uri(URI.create("{{baseUrl}}/:service/transformer_info"))
.method("GET", HttpRequest.BodyPublishers.noBody())
.build();
HttpResponse response = HttpClient.newHttpClient().send(request, HttpResponse.BodyHandlers.ofString());
System.out.println(response.body());
OkHttpClient client = new OkHttpClient();
Request request = new Request.Builder()
.url("{{baseUrl}}/:service/transformer_info")
.get()
.build();
Response response = client.newCall(request).execute();
HttpResponse response = Unirest.get("{{baseUrl}}/:service/transformer_info")
.asString();
const data = null;
const xhr = new XMLHttpRequest();
xhr.withCredentials = true;
xhr.addEventListener('readystatechange', function () {
if (this.readyState === this.DONE) {
console.log(this.responseText);
}
});
xhr.open('GET', '{{baseUrl}}/:service/transformer_info');
xhr.send(data);
import axios from 'axios';
const options = {method: 'GET', url: '{{baseUrl}}/:service/transformer_info'};
try {
const { data } = await axios.request(options);
console.log(data);
} catch (error) {
console.error(error);
}
const url = '{{baseUrl}}/:service/transformer_info';
const options = {method: 'GET'};
try {
const response = await fetch(url, options);
const data = await response.json();
console.log(data);
} catch (error) {
console.error(error);
}
const settings = {
async: true,
crossDomain: true,
url: '{{baseUrl}}/:service/transformer_info',
method: 'GET',
headers: {}
};
$.ajax(settings).done(function (response) {
console.log(response);
});
val client = OkHttpClient()
val request = Request.Builder()
.url("{{baseUrl}}/:service/transformer_info")
.get()
.build()
val response = client.newCall(request).execute()
const http = require('https');
const options = {
method: 'GET',
hostname: 'example.com',
port: null,
path: '/baseUrl/:service/transformer_info',
headers: {}
};
const req = http.request(options, function (res) {
const chunks = [];
res.on('data', function (chunk) {
chunks.push(chunk);
});
res.on('end', function () {
const body = Buffer.concat(chunks);
console.log(body.toString());
});
});
req.end();
const request = require('request');
const options = {method: 'GET', url: '{{baseUrl}}/:service/transformer_info'};
request(options, function (error, response, body) {
if (error) throw new Error(error);
console.log(body);
});
const unirest = require('unirest');
const req = unirest('GET', '{{baseUrl}}/:service/transformer_info');
req.end(function (res) {
if (res.error) throw new Error(res.error);
console.log(res.body);
});
const axios = require('axios').default;
const options = {method: 'GET', url: '{{baseUrl}}/:service/transformer_info'};
try {
const { data } = await axios.request(options);
console.log(data);
} catch (error) {
console.error(error);
}
const fetch = require('node-fetch');
const url = '{{baseUrl}}/:service/transformer_info';
const options = {method: 'GET'};
try {
const response = await fetch(url, options);
const data = await response.json();
console.log(data);
} catch (error) {
console.error(error);
}
#import
NSMutableURLRequest *request = [NSMutableURLRequest requestWithURL:[NSURL URLWithString:@"{{baseUrl}}/:service/transformer_info"]
cachePolicy:NSURLRequestUseProtocolCachePolicy
timeoutInterval:10.0];
[request setHTTPMethod:@"GET"];
NSURLSession *session = [NSURLSession sharedSession];
NSURLSessionDataTask *dataTask = [session dataTaskWithRequest:request
completionHandler:^(NSData *data, NSURLResponse *response, NSError *error) {
if (error) {
NSLog(@"%@", error);
} else {
NSHTTPURLResponse *httpResponse = (NSHTTPURLResponse *) response;
NSLog(@"%@", httpResponse);
}
}];
[dataTask resume];
open Cohttp_lwt_unix
open Cohttp
open Lwt
let uri = Uri.of_string "{{baseUrl}}/:service/transformer_info" in
Client.call `GET uri
>>= fun (res, body_stream) ->
(* Do stuff with the result *)
"{{baseUrl}}/:service/transformer_info",
CURLOPT_RETURNTRANSFER => true,
CURLOPT_ENCODING => "",
CURLOPT_MAXREDIRS => 10,
CURLOPT_TIMEOUT => 30,
CURLOPT_HTTP_VERSION => CURL_HTTP_VERSION_1_1,
CURLOPT_CUSTOMREQUEST => "GET",
]);
$response = curl_exec($curl);
$err = curl_error($curl);
curl_close($curl);
if ($err) {
echo "cURL Error #:" . $err;
} else {
echo $response;
}
request('GET', '{{baseUrl}}/:service/transformer_info');
echo $response->getBody();
setUrl('{{baseUrl}}/:service/transformer_info');
$request->setMethod(HTTP_METH_GET);
try {
$response = $request->send();
echo $response->getBody();
} catch (HttpException $ex) {
echo $ex;
}
setRequestUrl('{{baseUrl}}/:service/transformer_info');
$request->setRequestMethod('GET');
$client->enqueue($request)->send();
$response = $client->getResponse();
echo $response->getBody();
$response = Invoke-WebRequest -Uri '{{baseUrl}}/:service/transformer_info' -Method GET
$response = Invoke-RestMethod -Uri '{{baseUrl}}/:service/transformer_info' -Method GET
import http.client
conn = http.client.HTTPSConnection("example.com")
conn.request("GET", "/baseUrl/:service/transformer_info")
res = conn.getresponse()
data = res.read()
print(data.decode("utf-8"))
import requests
url = "{{baseUrl}}/:service/transformer_info"
response = requests.get(url)
print(response.json())
library(httr)
url <- "{{baseUrl}}/:service/transformer_info"
response <- VERB("GET", url, content_type("application/octet-stream"))
content(response, "text")
require 'uri'
require 'net/http'
url = URI("{{baseUrl}}/:service/transformer_info")
http = Net::HTTP.new(url.host, url.port)
http.use_ssl = true
request = Net::HTTP::Get.new(url)
response = http.request(request)
puts response.read_body
require 'faraday'
conn = Faraday.new(
url: 'https://example.com',
)
response = conn.get('/baseUrl/:service/transformer_info') do |req|
end
puts response.status
puts response.body
use reqwest;
#[tokio::main]
pub async fn main() {
let url = "{{baseUrl}}/:service/transformer_info";
let client = reqwest::Client::new();
let response = client.get(url)
.send()
.await;
let results = response.unwrap()
.json::()
.await
.unwrap();
dbg!(results);
}
curl --request GET \
--url {{baseUrl}}/:service/transformer_info
http GET {{baseUrl}}/:service/transformer_info
wget --quiet \
--method GET \
--output-document \
- {{baseUrl}}/:service/transformer_info
import Foundation
let request = NSMutableURLRequest(url: NSURL(string: "{{baseUrl}}/:service/transformer_info")! as URL,
cachePolicy: .useProtocolCachePolicy,
timeoutInterval: 10.0)
request.httpMethod = "GET"
let session = URLSession.shared
let dataTask = session.dataTask(with: request as URLRequest, completionHandler: { (data, response, error) -> Void in
if (error != nil) {
print(error as Any)
} else {
let httpResponse = response as? HTTPURLResponse
print(httpResponse)
}
})
dataTask.resume()
RESPONSE HEADERS
Content-Type
application/json
RESPONSE BODY json
{
"knowledge_map": {
"predicates": [
{
"predicate": "predicate",
"inverse_relations": [
"inverse_relations",
"inverse_relations"
],
"subject": "subject",
"count": 6,
"attributes": [
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
},
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
}
],
"source": "ChEMBL",
"relations": [
"binds_to"
],
"inverse_predicate": "inverse_predicate",
"object": "object"
},
{
"predicate": "predicate",
"inverse_relations": [
"inverse_relations",
"inverse_relations"
],
"subject": "subject",
"count": 6,
"attributes": [
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
},
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
}
],
"source": "ChEMBL",
"relations": [
"binds_to"
],
"inverse_predicate": "inverse_predicate",
"object": "object"
}
],
"nodes": {
"key": {
"id_prefixes": [
"ChEMBL:",
"inchikey:"
],
"count": 0,
"attributes": [
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
},
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
}
]
}
},
"output_class": "output_class",
"edges": [
{
"predicate": "predicate",
"inverse_relations": [
"inverse_relations",
"inverse_relations"
],
"subject": "subject",
"count": 6,
"attributes": [
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
},
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
}
],
"source": "ChEMBL",
"relations": [
"binds_to"
],
"inverse_predicate": "inverse_predicate",
"object": "object"
},
{
"predicate": "predicate",
"inverse_relations": [
"inverse_relations",
"inverse_relations"
],
"subject": "subject",
"count": 6,
"attributes": [
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
},
{
"names": [
"PubMed Identifier"
],
"attribute_type_id": "EDAM:data_1187",
"source": "UniProtKB",
"type": "EDAM:data_1187"
}
],
"source": "ChEMBL",
"relations": [
"binds_to"
],
"inverse_predicate": "inverse_predicate",
"object": "object"
}
],
"input_class": "input_class"
},
"function": "producer",
"name": "name",
"description": "description",
"label": "label",
"version": "version",
"parameters": [
{
"allowed_values": [
"allowed_values",
"allowed_values"
],
"default": "default",
"allowed_range": [
1.4658129805029452,
1.4658129805029452
],
"multivalued": true,
"name": "name",
"suggested_values": "suggested_values",
"type": "Boolean",
"required": true,
"example": "example"
},
{
"allowed_values": [
"allowed_values",
"allowed_values"
],
"default": "default",
"allowed_range": [
1.4658129805029452,
1.4658129805029452
],
"multivalued": true,
"name": "name",
"suggested_values": "suggested_values",
"type": "Boolean",
"required": true,
"example": "example"
}
],
"properties": {
"source_version": "source_version",
"method": "method",
"terms_of_service": "terms_of_service",
"method_url": "method_url",
"source_url": "source_url"
}
}
POST
Transform a list of genes or compounds
{{baseUrl}}/:service/transform
QUERY PARAMS
service
BODY json
{
"collection": [
{
"id": "",
"biolink_class": "",
"identifiers": {},
"alternative_identifiers": [
{}
],
"names_synonyms": [
{
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
}
],
"attributes": [
{
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
}
],
"connections": [
{
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [
{}
]
}
],
"source": "",
"provided_by": ""
}
],
"controls": [
{
"name": "",
"value": ""
}
]
}
Examples
REQUEST
CURL *hnd = curl_easy_init();
curl_easy_setopt(hnd, CURLOPT_CUSTOMREQUEST, "POST");
curl_easy_setopt(hnd, CURLOPT_URL, "{{baseUrl}}/:service/transform");
struct curl_slist *headers = NULL;
headers = curl_slist_append(headers, "content-type: application/json");
curl_easy_setopt(hnd, CURLOPT_HTTPHEADER, headers);
curl_easy_setopt(hnd, CURLOPT_POSTFIELDS, "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}");
CURLcode ret = curl_easy_perform(hnd);
(require '[clj-http.client :as client])
(client/post "{{baseUrl}}/:service/transform" {:content-type :json
:form-params {:collection [{:id ""
:biolink_class ""
:identifiers {}
:alternative_identifiers [{}]
:names_synonyms [{:name ""
:synonyms []
:name_type ""
:source ""
:provided_by ""
:language ""}]
:attributes [{:attribute_type_id ""
:original_attribute_name ""
:value ""
:value_type_id ""
:attribute_source ""
:value_url ""
:description ""
:attributes []
:provided_by ""}]
:connections [{:source_element_id ""
:biolink_predicate ""
:inverse_predicate ""
:relation ""
:inverse_relation ""
:source ""
:provided_by ""
:attributes [{}]}]
:source ""
:provided_by ""}]
:controls [{:name ""
:value ""}]}})
require "http/client"
url = "{{baseUrl}}/:service/transform"
headers = HTTP::Headers{
"content-type" => "application/json"
}
reqBody = "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}"
response = HTTP::Client.post url, headers: headers, body: reqBody
puts response.body
using System.Net.Http.Headers;
var client = new HttpClient();
var request = new HttpRequestMessage
{
Method = HttpMethod.Post,
RequestUri = new Uri("{{baseUrl}}/:service/transform"),
Content = new StringContent("{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}")
{
Headers =
{
ContentType = new MediaTypeHeaderValue("application/json")
}
}
};
using (var response = await client.SendAsync(request))
{
response.EnsureSuccessStatusCode();
var body = await response.Content.ReadAsStringAsync();
Console.WriteLine(body);
}
var client = new RestClient("{{baseUrl}}/:service/transform");
var request = new RestRequest("", Method.Post);
request.AddHeader("content-type", "application/json");
request.AddParameter("application/json", "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}", ParameterType.RequestBody);
var response = client.Execute(request);
package main
import (
"fmt"
"strings"
"net/http"
"io"
)
func main() {
url := "{{baseUrl}}/:service/transform"
payload := strings.NewReader("{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}")
req, _ := http.NewRequest("POST", url, payload)
req.Header.Add("content-type", "application/json")
res, _ := http.DefaultClient.Do(req)
defer res.Body.Close()
body, _ := io.ReadAll(res.Body)
fmt.Println(res)
fmt.Println(string(body))
}
POST /baseUrl/:service/transform HTTP/1.1
Content-Type: application/json
Host: example.com
Content-Length: 1131
{
"collection": [
{
"id": "",
"biolink_class": "",
"identifiers": {},
"alternative_identifiers": [
{}
],
"names_synonyms": [
{
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
}
],
"attributes": [
{
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
}
],
"connections": [
{
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [
{}
]
}
],
"source": "",
"provided_by": ""
}
],
"controls": [
{
"name": "",
"value": ""
}
]
}
AsyncHttpClient client = new DefaultAsyncHttpClient();
client.prepare("POST", "{{baseUrl}}/:service/transform")
.setHeader("content-type", "application/json")
.setBody("{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}")
.execute()
.toCompletableFuture()
.thenAccept(System.out::println)
.join();
client.close();
HttpRequest request = HttpRequest.newBuilder()
.uri(URI.create("{{baseUrl}}/:service/transform"))
.header("content-type", "application/json")
.method("POST", HttpRequest.BodyPublishers.ofString("{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}"))
.build();
HttpResponse response = HttpClient.newHttpClient().send(request, HttpResponse.BodyHandlers.ofString());
System.out.println(response.body());
OkHttpClient client = new OkHttpClient();
MediaType mediaType = MediaType.parse("application/json");
RequestBody body = RequestBody.create(mediaType, "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}");
Request request = new Request.Builder()
.url("{{baseUrl}}/:service/transform")
.post(body)
.addHeader("content-type", "application/json")
.build();
Response response = client.newCall(request).execute();
HttpResponse response = Unirest.post("{{baseUrl}}/:service/transform")
.header("content-type", "application/json")
.body("{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}")
.asString();
const data = JSON.stringify({
collection: [
{
id: '',
biolink_class: '',
identifiers: {},
alternative_identifiers: [
{}
],
names_synonyms: [
{
name: '',
synonyms: [],
name_type: '',
source: '',
provided_by: '',
language: ''
}
],
attributes: [
{
attribute_type_id: '',
original_attribute_name: '',
value: '',
value_type_id: '',
attribute_source: '',
value_url: '',
description: '',
attributes: [],
provided_by: ''
}
],
connections: [
{
source_element_id: '',
biolink_predicate: '',
inverse_predicate: '',
relation: '',
inverse_relation: '',
source: '',
provided_by: '',
attributes: [
{}
]
}
],
source: '',
provided_by: ''
}
],
controls: [
{
name: '',
value: ''
}
]
});
const xhr = new XMLHttpRequest();
xhr.withCredentials = true;
xhr.addEventListener('readystatechange', function () {
if (this.readyState === this.DONE) {
console.log(this.responseText);
}
});
xhr.open('POST', '{{baseUrl}}/:service/transform');
xhr.setRequestHeader('content-type', 'application/json');
xhr.send(data);
import axios from 'axios';
const options = {
method: 'POST',
url: '{{baseUrl}}/:service/transform',
headers: {'content-type': 'application/json'},
data: {
collection: [
{
id: '',
biolink_class: '',
identifiers: {},
alternative_identifiers: [{}],
names_synonyms: [
{
name: '',
synonyms: [],
name_type: '',
source: '',
provided_by: '',
language: ''
}
],
attributes: [
{
attribute_type_id: '',
original_attribute_name: '',
value: '',
value_type_id: '',
attribute_source: '',
value_url: '',
description: '',
attributes: [],
provided_by: ''
}
],
connections: [
{
source_element_id: '',
biolink_predicate: '',
inverse_predicate: '',
relation: '',
inverse_relation: '',
source: '',
provided_by: '',
attributes: [{}]
}
],
source: '',
provided_by: ''
}
],
controls: [{name: '', value: ''}]
}
};
try {
const { data } = await axios.request(options);
console.log(data);
} catch (error) {
console.error(error);
}
const url = '{{baseUrl}}/:service/transform';
const options = {
method: 'POST',
headers: {'content-type': 'application/json'},
body: '{"collection":[{"id":"","biolink_class":"","identifiers":{},"alternative_identifiers":[{}],"names_synonyms":[{"name":"","synonyms":[],"name_type":"","source":"","provided_by":"","language":""}],"attributes":[{"attribute_type_id":"","original_attribute_name":"","value":"","value_type_id":"","attribute_source":"","value_url":"","description":"","attributes":[],"provided_by":""}],"connections":[{"source_element_id":"","biolink_predicate":"","inverse_predicate":"","relation":"","inverse_relation":"","source":"","provided_by":"","attributes":[{}]}],"source":"","provided_by":""}],"controls":[{"name":"","value":""}]}'
};
try {
const response = await fetch(url, options);
const data = await response.json();
console.log(data);
} catch (error) {
console.error(error);
}
const settings = {
async: true,
crossDomain: true,
url: '{{baseUrl}}/:service/transform',
method: 'POST',
headers: {
'content-type': 'application/json'
},
processData: false,
data: '{\n "collection": [\n {\n "id": "",\n "biolink_class": "",\n "identifiers": {},\n "alternative_identifiers": [\n {}\n ],\n "names_synonyms": [\n {\n "name": "",\n "synonyms": [],\n "name_type": "",\n "source": "",\n "provided_by": "",\n "language": ""\n }\n ],\n "attributes": [\n {\n "attribute_type_id": "",\n "original_attribute_name": "",\n "value": "",\n "value_type_id": "",\n "attribute_source": "",\n "value_url": "",\n "description": "",\n "attributes": [],\n "provided_by": ""\n }\n ],\n "connections": [\n {\n "source_element_id": "",\n "biolink_predicate": "",\n "inverse_predicate": "",\n "relation": "",\n "inverse_relation": "",\n "source": "",\n "provided_by": "",\n "attributes": [\n {}\n ]\n }\n ],\n "source": "",\n "provided_by": ""\n }\n ],\n "controls": [\n {\n "name": "",\n "value": ""\n }\n ]\n}'
};
$.ajax(settings).done(function (response) {
console.log(response);
});
val client = OkHttpClient()
val mediaType = MediaType.parse("application/json")
val body = RequestBody.create(mediaType, "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}")
val request = Request.Builder()
.url("{{baseUrl}}/:service/transform")
.post(body)
.addHeader("content-type", "application/json")
.build()
val response = client.newCall(request).execute()
const http = require('https');
const options = {
method: 'POST',
hostname: 'example.com',
port: null,
path: '/baseUrl/:service/transform',
headers: {
'content-type': 'application/json'
}
};
const req = http.request(options, function (res) {
const chunks = [];
res.on('data', function (chunk) {
chunks.push(chunk);
});
res.on('end', function () {
const body = Buffer.concat(chunks);
console.log(body.toString());
});
});
req.write(JSON.stringify({
collection: [
{
id: '',
biolink_class: '',
identifiers: {},
alternative_identifiers: [{}],
names_synonyms: [
{
name: '',
synonyms: [],
name_type: '',
source: '',
provided_by: '',
language: ''
}
],
attributes: [
{
attribute_type_id: '',
original_attribute_name: '',
value: '',
value_type_id: '',
attribute_source: '',
value_url: '',
description: '',
attributes: [],
provided_by: ''
}
],
connections: [
{
source_element_id: '',
biolink_predicate: '',
inverse_predicate: '',
relation: '',
inverse_relation: '',
source: '',
provided_by: '',
attributes: [{}]
}
],
source: '',
provided_by: ''
}
],
controls: [{name: '', value: ''}]
}));
req.end();
const request = require('request');
const options = {
method: 'POST',
url: '{{baseUrl}}/:service/transform',
headers: {'content-type': 'application/json'},
body: {
collection: [
{
id: '',
biolink_class: '',
identifiers: {},
alternative_identifiers: [{}],
names_synonyms: [
{
name: '',
synonyms: [],
name_type: '',
source: '',
provided_by: '',
language: ''
}
],
attributes: [
{
attribute_type_id: '',
original_attribute_name: '',
value: '',
value_type_id: '',
attribute_source: '',
value_url: '',
description: '',
attributes: [],
provided_by: ''
}
],
connections: [
{
source_element_id: '',
biolink_predicate: '',
inverse_predicate: '',
relation: '',
inverse_relation: '',
source: '',
provided_by: '',
attributes: [{}]
}
],
source: '',
provided_by: ''
}
],
controls: [{name: '', value: ''}]
},
json: true
};
request(options, function (error, response, body) {
if (error) throw new Error(error);
console.log(body);
});
const unirest = require('unirest');
const req = unirest('POST', '{{baseUrl}}/:service/transform');
req.headers({
'content-type': 'application/json'
});
req.type('json');
req.send({
collection: [
{
id: '',
biolink_class: '',
identifiers: {},
alternative_identifiers: [
{}
],
names_synonyms: [
{
name: '',
synonyms: [],
name_type: '',
source: '',
provided_by: '',
language: ''
}
],
attributes: [
{
attribute_type_id: '',
original_attribute_name: '',
value: '',
value_type_id: '',
attribute_source: '',
value_url: '',
description: '',
attributes: [],
provided_by: ''
}
],
connections: [
{
source_element_id: '',
biolink_predicate: '',
inverse_predicate: '',
relation: '',
inverse_relation: '',
source: '',
provided_by: '',
attributes: [
{}
]
}
],
source: '',
provided_by: ''
}
],
controls: [
{
name: '',
value: ''
}
]
});
req.end(function (res) {
if (res.error) throw new Error(res.error);
console.log(res.body);
});
const axios = require('axios').default;
const options = {
method: 'POST',
url: '{{baseUrl}}/:service/transform',
headers: {'content-type': 'application/json'},
data: {
collection: [
{
id: '',
biolink_class: '',
identifiers: {},
alternative_identifiers: [{}],
names_synonyms: [
{
name: '',
synonyms: [],
name_type: '',
source: '',
provided_by: '',
language: ''
}
],
attributes: [
{
attribute_type_id: '',
original_attribute_name: '',
value: '',
value_type_id: '',
attribute_source: '',
value_url: '',
description: '',
attributes: [],
provided_by: ''
}
],
connections: [
{
source_element_id: '',
biolink_predicate: '',
inverse_predicate: '',
relation: '',
inverse_relation: '',
source: '',
provided_by: '',
attributes: [{}]
}
],
source: '',
provided_by: ''
}
],
controls: [{name: '', value: ''}]
}
};
try {
const { data } = await axios.request(options);
console.log(data);
} catch (error) {
console.error(error);
}
const fetch = require('node-fetch');
const url = '{{baseUrl}}/:service/transform';
const options = {
method: 'POST',
headers: {'content-type': 'application/json'},
body: '{"collection":[{"id":"","biolink_class":"","identifiers":{},"alternative_identifiers":[{}],"names_synonyms":[{"name":"","synonyms":[],"name_type":"","source":"","provided_by":"","language":""}],"attributes":[{"attribute_type_id":"","original_attribute_name":"","value":"","value_type_id":"","attribute_source":"","value_url":"","description":"","attributes":[],"provided_by":""}],"connections":[{"source_element_id":"","biolink_predicate":"","inverse_predicate":"","relation":"","inverse_relation":"","source":"","provided_by":"","attributes":[{}]}],"source":"","provided_by":""}],"controls":[{"name":"","value":""}]}'
};
try {
const response = await fetch(url, options);
const data = await response.json();
console.log(data);
} catch (error) {
console.error(error);
}
#import
NSDictionary *headers = @{ @"content-type": @"application/json" };
NSDictionary *parameters = @{ @"collection": @[ @{ @"id": @"", @"biolink_class": @"", @"identifiers": @{ }, @"alternative_identifiers": @[ @{ } ], @"names_synonyms": @[ @{ @"name": @"", @"synonyms": @[ ], @"name_type": @"", @"source": @"", @"provided_by": @"", @"language": @"" } ], @"attributes": @[ @{ @"attribute_type_id": @"", @"original_attribute_name": @"", @"value": @"", @"value_type_id": @"", @"attribute_source": @"", @"value_url": @"", @"description": @"", @"attributes": @[ ], @"provided_by": @"" } ], @"connections": @[ @{ @"source_element_id": @"", @"biolink_predicate": @"", @"inverse_predicate": @"", @"relation": @"", @"inverse_relation": @"", @"source": @"", @"provided_by": @"", @"attributes": @[ @{ } ] } ], @"source": @"", @"provided_by": @"" } ],
@"controls": @[ @{ @"name": @"", @"value": @"" } ] };
NSData *postData = [NSJSONSerialization dataWithJSONObject:parameters options:0 error:nil];
NSMutableURLRequest *request = [NSMutableURLRequest requestWithURL:[NSURL URLWithString:@"{{baseUrl}}/:service/transform"]
cachePolicy:NSURLRequestUseProtocolCachePolicy
timeoutInterval:10.0];
[request setHTTPMethod:@"POST"];
[request setAllHTTPHeaderFields:headers];
[request setHTTPBody:postData];
NSURLSession *session = [NSURLSession sharedSession];
NSURLSessionDataTask *dataTask = [session dataTaskWithRequest:request
completionHandler:^(NSData *data, NSURLResponse *response, NSError *error) {
if (error) {
NSLog(@"%@", error);
} else {
NSHTTPURLResponse *httpResponse = (NSHTTPURLResponse *) response;
NSLog(@"%@", httpResponse);
}
}];
[dataTask resume];
open Cohttp_lwt_unix
open Cohttp
open Lwt
let uri = Uri.of_string "{{baseUrl}}/:service/transform" in
let headers = Header.add (Header.init ()) "content-type" "application/json" in
let body = Cohttp_lwt_body.of_string "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}" in
Client.call ~headers ~body `POST uri
>>= fun (res, body_stream) ->
(* Do stuff with the result *)
"{{baseUrl}}/:service/transform",
CURLOPT_RETURNTRANSFER => true,
CURLOPT_ENCODING => "",
CURLOPT_MAXREDIRS => 10,
CURLOPT_TIMEOUT => 30,
CURLOPT_HTTP_VERSION => CURL_HTTP_VERSION_1_1,
CURLOPT_CUSTOMREQUEST => "POST",
CURLOPT_POSTFIELDS => json_encode([
'collection' => [
[
'id' => '',
'biolink_class' => '',
'identifiers' => [
],
'alternative_identifiers' => [
[
]
],
'names_synonyms' => [
[
'name' => '',
'synonyms' => [
],
'name_type' => '',
'source' => '',
'provided_by' => '',
'language' => ''
]
],
'attributes' => [
[
'attribute_type_id' => '',
'original_attribute_name' => '',
'value' => '',
'value_type_id' => '',
'attribute_source' => '',
'value_url' => '',
'description' => '',
'attributes' => [
],
'provided_by' => ''
]
],
'connections' => [
[
'source_element_id' => '',
'biolink_predicate' => '',
'inverse_predicate' => '',
'relation' => '',
'inverse_relation' => '',
'source' => '',
'provided_by' => '',
'attributes' => [
[
]
]
]
],
'source' => '',
'provided_by' => ''
]
],
'controls' => [
[
'name' => '',
'value' => ''
]
]
]),
CURLOPT_HTTPHEADER => [
"content-type: application/json"
],
]);
$response = curl_exec($curl);
$err = curl_error($curl);
curl_close($curl);
if ($err) {
echo "cURL Error #:" . $err;
} else {
echo $response;
}
request('POST', '{{baseUrl}}/:service/transform', [
'body' => '{
"collection": [
{
"id": "",
"biolink_class": "",
"identifiers": {},
"alternative_identifiers": [
{}
],
"names_synonyms": [
{
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
}
],
"attributes": [
{
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
}
],
"connections": [
{
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [
{}
]
}
],
"source": "",
"provided_by": ""
}
],
"controls": [
{
"name": "",
"value": ""
}
]
}',
'headers' => [
'content-type' => 'application/json',
],
]);
echo $response->getBody();
setUrl('{{baseUrl}}/:service/transform');
$request->setMethod(HTTP_METH_POST);
$request->setHeaders([
'content-type' => 'application/json'
]);
$request->setContentType('application/json');
$request->setBody(json_encode([
'collection' => [
[
'id' => '',
'biolink_class' => '',
'identifiers' => [
],
'alternative_identifiers' => [
[
]
],
'names_synonyms' => [
[
'name' => '',
'synonyms' => [
],
'name_type' => '',
'source' => '',
'provided_by' => '',
'language' => ''
]
],
'attributes' => [
[
'attribute_type_id' => '',
'original_attribute_name' => '',
'value' => '',
'value_type_id' => '',
'attribute_source' => '',
'value_url' => '',
'description' => '',
'attributes' => [
],
'provided_by' => ''
]
],
'connections' => [
[
'source_element_id' => '',
'biolink_predicate' => '',
'inverse_predicate' => '',
'relation' => '',
'inverse_relation' => '',
'source' => '',
'provided_by' => '',
'attributes' => [
[
]
]
]
],
'source' => '',
'provided_by' => ''
]
],
'controls' => [
[
'name' => '',
'value' => ''
]
]
]));
try {
$response = $request->send();
echo $response->getBody();
} catch (HttpException $ex) {
echo $ex;
}
append(json_encode([
'collection' => [
[
'id' => '',
'biolink_class' => '',
'identifiers' => [
],
'alternative_identifiers' => [
[
]
],
'names_synonyms' => [
[
'name' => '',
'synonyms' => [
],
'name_type' => '',
'source' => '',
'provided_by' => '',
'language' => ''
]
],
'attributes' => [
[
'attribute_type_id' => '',
'original_attribute_name' => '',
'value' => '',
'value_type_id' => '',
'attribute_source' => '',
'value_url' => '',
'description' => '',
'attributes' => [
],
'provided_by' => ''
]
],
'connections' => [
[
'source_element_id' => '',
'biolink_predicate' => '',
'inverse_predicate' => '',
'relation' => '',
'inverse_relation' => '',
'source' => '',
'provided_by' => '',
'attributes' => [
[
]
]
]
],
'source' => '',
'provided_by' => ''
]
],
'controls' => [
[
'name' => '',
'value' => ''
]
]
]));
$request->setRequestUrl('{{baseUrl}}/:service/transform');
$request->setRequestMethod('POST');
$request->setBody($body);
$request->setHeaders([
'content-type' => 'application/json'
]);
$client->enqueue($request)->send();
$response = $client->getResponse();
echo $response->getBody();
$headers=@{}
$headers.Add("content-type", "application/json")
$response = Invoke-WebRequest -Uri '{{baseUrl}}/:service/transform' -Method POST -Headers $headers -ContentType 'application/json' -Body '{
"collection": [
{
"id": "",
"biolink_class": "",
"identifiers": {},
"alternative_identifiers": [
{}
],
"names_synonyms": [
{
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
}
],
"attributes": [
{
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
}
],
"connections": [
{
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [
{}
]
}
],
"source": "",
"provided_by": ""
}
],
"controls": [
{
"name": "",
"value": ""
}
]
}'
$headers=@{}
$headers.Add("content-type", "application/json")
$response = Invoke-RestMethod -Uri '{{baseUrl}}/:service/transform' -Method POST -Headers $headers -ContentType 'application/json' -Body '{
"collection": [
{
"id": "",
"biolink_class": "",
"identifiers": {},
"alternative_identifiers": [
{}
],
"names_synonyms": [
{
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
}
],
"attributes": [
{
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
}
],
"connections": [
{
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [
{}
]
}
],
"source": "",
"provided_by": ""
}
],
"controls": [
{
"name": "",
"value": ""
}
]
}'
import http.client
conn = http.client.HTTPSConnection("example.com")
payload = "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}"
headers = { 'content-type': "application/json" }
conn.request("POST", "/baseUrl/:service/transform", payload, headers)
res = conn.getresponse()
data = res.read()
print(data.decode("utf-8"))
import requests
url = "{{baseUrl}}/:service/transform"
payload = {
"collection": [
{
"id": "",
"biolink_class": "",
"identifiers": {},
"alternative_identifiers": [{}],
"names_synonyms": [
{
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
}
],
"attributes": [
{
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
}
],
"connections": [
{
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [{}]
}
],
"source": "",
"provided_by": ""
}
],
"controls": [
{
"name": "",
"value": ""
}
]
}
headers = {"content-type": "application/json"}
response = requests.post(url, json=payload, headers=headers)
print(response.json())
library(httr)
url <- "{{baseUrl}}/:service/transform"
payload <- "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}"
encode <- "json"
response <- VERB("POST", url, body = payload, content_type("application/json"), encode = encode)
content(response, "text")
require 'uri'
require 'net/http'
url = URI("{{baseUrl}}/:service/transform")
http = Net::HTTP.new(url.host, url.port)
http.use_ssl = true
request = Net::HTTP::Post.new(url)
request["content-type"] = 'application/json'
request.body = "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}"
response = http.request(request)
puts response.read_body
require 'faraday'
conn = Faraday.new(
url: 'https://example.com',
headers: {'Content-Type' => 'application/json'}
)
response = conn.post('/baseUrl/:service/transform') do |req|
req.body = "{\n \"collection\": [\n {\n \"id\": \"\",\n \"biolink_class\": \"\",\n \"identifiers\": {},\n \"alternative_identifiers\": [\n {}\n ],\n \"names_synonyms\": [\n {\n \"name\": \"\",\n \"synonyms\": [],\n \"name_type\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"language\": \"\"\n }\n ],\n \"attributes\": [\n {\n \"attribute_type_id\": \"\",\n \"original_attribute_name\": \"\",\n \"value\": \"\",\n \"value_type_id\": \"\",\n \"attribute_source\": \"\",\n \"value_url\": \"\",\n \"description\": \"\",\n \"attributes\": [],\n \"provided_by\": \"\"\n }\n ],\n \"connections\": [\n {\n \"source_element_id\": \"\",\n \"biolink_predicate\": \"\",\n \"inverse_predicate\": \"\",\n \"relation\": \"\",\n \"inverse_relation\": \"\",\n \"source\": \"\",\n \"provided_by\": \"\",\n \"attributes\": [\n {}\n ]\n }\n ],\n \"source\": \"\",\n \"provided_by\": \"\"\n }\n ],\n \"controls\": [\n {\n \"name\": \"\",\n \"value\": \"\"\n }\n ]\n}"
end
puts response.status
puts response.body
use serde_json::json;
use reqwest;
#[tokio::main]
pub async fn main() {
let url = "{{baseUrl}}/:service/transform";
let payload = json!({
"collection": (
json!({
"id": "",
"biolink_class": "",
"identifiers": json!({}),
"alternative_identifiers": (json!({})),
"names_synonyms": (
json!({
"name": "",
"synonyms": (),
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
})
),
"attributes": (
json!({
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": (),
"provided_by": ""
})
),
"connections": (
json!({
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": (json!({}))
})
),
"source": "",
"provided_by": ""
})
),
"controls": (
json!({
"name": "",
"value": ""
})
)
});
let mut headers = reqwest::header::HeaderMap::new();
headers.insert("content-type", "application/json".parse().unwrap());
let client = reqwest::Client::new();
let response = client.post(url)
.headers(headers)
.json(&payload)
.send()
.await;
let results = response.unwrap()
.json::()
.await
.unwrap();
dbg!(results);
}
curl --request POST \
--url {{baseUrl}}/:service/transform \
--header 'content-type: application/json' \
--data '{
"collection": [
{
"id": "",
"biolink_class": "",
"identifiers": {},
"alternative_identifiers": [
{}
],
"names_synonyms": [
{
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
}
],
"attributes": [
{
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
}
],
"connections": [
{
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [
{}
]
}
],
"source": "",
"provided_by": ""
}
],
"controls": [
{
"name": "",
"value": ""
}
]
}'
echo '{
"collection": [
{
"id": "",
"biolink_class": "",
"identifiers": {},
"alternative_identifiers": [
{}
],
"names_synonyms": [
{
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
}
],
"attributes": [
{
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
}
],
"connections": [
{
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [
{}
]
}
],
"source": "",
"provided_by": ""
}
],
"controls": [
{
"name": "",
"value": ""
}
]
}' | \
http POST {{baseUrl}}/:service/transform \
content-type:application/json
wget --quiet \
--method POST \
--header 'content-type: application/json' \
--body-data '{\n "collection": [\n {\n "id": "",\n "biolink_class": "",\n "identifiers": {},\n "alternative_identifiers": [\n {}\n ],\n "names_synonyms": [\n {\n "name": "",\n "synonyms": [],\n "name_type": "",\n "source": "",\n "provided_by": "",\n "language": ""\n }\n ],\n "attributes": [\n {\n "attribute_type_id": "",\n "original_attribute_name": "",\n "value": "",\n "value_type_id": "",\n "attribute_source": "",\n "value_url": "",\n "description": "",\n "attributes": [],\n "provided_by": ""\n }\n ],\n "connections": [\n {\n "source_element_id": "",\n "biolink_predicate": "",\n "inverse_predicate": "",\n "relation": "",\n "inverse_relation": "",\n "source": "",\n "provided_by": "",\n "attributes": [\n {}\n ]\n }\n ],\n "source": "",\n "provided_by": ""\n }\n ],\n "controls": [\n {\n "name": "",\n "value": ""\n }\n ]\n}' \
--output-document \
- {{baseUrl}}/:service/transform
import Foundation
let headers = ["content-type": "application/json"]
let parameters = [
"collection": [
[
"id": "",
"biolink_class": "",
"identifiers": [],
"alternative_identifiers": [[]],
"names_synonyms": [
[
"name": "",
"synonyms": [],
"name_type": "",
"source": "",
"provided_by": "",
"language": ""
]
],
"attributes": [
[
"attribute_type_id": "",
"original_attribute_name": "",
"value": "",
"value_type_id": "",
"attribute_source": "",
"value_url": "",
"description": "",
"attributes": [],
"provided_by": ""
]
],
"connections": [
[
"source_element_id": "",
"biolink_predicate": "",
"inverse_predicate": "",
"relation": "",
"inverse_relation": "",
"source": "",
"provided_by": "",
"attributes": [[]]
]
],
"source": "",
"provided_by": ""
]
],
"controls": [
[
"name": "",
"value": ""
]
]
] as [String : Any]
let postData = JSONSerialization.data(withJSONObject: parameters, options: [])
let request = NSMutableURLRequest(url: NSURL(string: "{{baseUrl}}/:service/transform")! as URL,
cachePolicy: .useProtocolCachePolicy,
timeoutInterval: 10.0)
request.httpMethod = "POST"
request.allHTTPHeaderFields = headers
request.httpBody = postData as Data
let session = URLSession.shared
let dataTask = session.dataTask(with: request as URLRequest, completionHandler: { (data, response, error) -> Void in
if (error != nil) {
print(error as Any)
} else {
let httpResponse = response as? HTTPURLResponse
print(httpResponse)
}
})
dataTask.resume()
RESPONSE HEADERS
Content-Type
application/json
RESPONSE BODY json
[
{
"biolink_class": "biolink_class",
"identifiers": {
"key": "{}"
},
"provided_by": "provided_by",
"attributes": [
{
"value_url": "https://pubmed.ncbi.nlm.nih.gov/32529952",
"attribute_source": "UniProtKB",
"value_type_id": "EDAM:data_1187",
"description": "Assertion Authored By Dr. Trans L. Ator",
"provided_by": "provided_by",
"attribute_type_id": "Biolink:has_p-value_evidence, Biolink:has_original_source",
"attributes": [
null,
null
],
"original_attribute_name": "p-value",
"value": 0.000153
},
{
"value_url": "https://pubmed.ncbi.nlm.nih.gov/32529952",
"attribute_source": "UniProtKB",
"value_type_id": "EDAM:data_1187",
"description": "Assertion Authored By Dr. Trans L. Ator",
"provided_by": "provided_by",
"attribute_type_id": "Biolink:has_p-value_evidence, Biolink:has_original_source",
"attributes": [
null,
null
],
"original_attribute_name": "p-value",
"value": 0.000153
}
],
"id": "id",
"source": "source",
"names_synonyms": [
{
"name_type": "name_type",
"synonyms": [
"synonyms",
"synonyms"
],
"name": "name",
"provided_by": "provided_by",
"language": "language",
"source": "source"
},
{
"name_type": "name_type",
"synonyms": [
"synonyms",
"synonyms"
],
"name": "name",
"provided_by": "provided_by",
"language": "language",
"source": "source"
}
],
"connections": [
{
"inverse_relation": "inverse_relation",
"provided_by": "provided_by",
"biolink_predicate": "biolink_predicate",
"attributes": [
{
"value_url": "https://pubmed.ncbi.nlm.nih.gov/32529952",
"attribute_source": "UniProtKB",
"value_type_id": "EDAM:data_1187",
"description": "Assertion Authored By Dr. Trans L. Ator",
"provided_by": "provided_by",
"attribute_type_id": "Biolink:has_p-value_evidence, Biolink:has_original_source",
"attributes": [
null,
null
],
"original_attribute_name": "p-value",
"value": 0.000153
},
{
"value_url": "https://pubmed.ncbi.nlm.nih.gov/32529952",
"attribute_source": "UniProtKB",
"value_type_id": "EDAM:data_1187",
"description": "Assertion Authored By Dr. Trans L. Ator",
"provided_by": "provided_by",
"attribute_type_id": "Biolink:has_p-value_evidence, Biolink:has_original_source",
"attributes": [
null,
null
],
"original_attribute_name": "p-value",
"value": 0.000153
}
],
"source": "source",
"inverse_predicate": "inverse_predicate",
"source_element_id": "source_element_id",
"relation": "relation"
},
{
"inverse_relation": "inverse_relation",
"provided_by": "provided_by",
"biolink_predicate": "biolink_predicate",
"attributes": [
{
"value_url": "https://pubmed.ncbi.nlm.nih.gov/32529952",
"attribute_source": "UniProtKB",
"value_type_id": "EDAM:data_1187",
"description": "Assertion Authored By Dr. Trans L. Ator",
"provided_by": "provided_by",
"attribute_type_id": "Biolink:has_p-value_evidence, Biolink:has_original_source",
"attributes": [
null,
null
],
"original_attribute_name": "p-value",
"value": 0.000153
},
{
"value_url": "https://pubmed.ncbi.nlm.nih.gov/32529952",
"attribute_source": "UniProtKB",
"value_type_id": "EDAM:data_1187",
"description": "Assertion Authored By Dr. Trans L. Ator",
"provided_by": "provided_by",
"attribute_type_id": "Biolink:has_p-value_evidence, Biolink:has_original_source",
"attributes": [
null,
null
],
"original_attribute_name": "p-value",
"value": 0.000153
}
],
"source": "source",
"inverse_predicate": "inverse_predicate",
"source_element_id": "source_element_id",
"relation": "relation"
}
],
"alternative_identifiers": [
{
"key": "{}"
},
{
"key": "{}"
}
]
}
]